GSM2417576: MIA CTRL 3; Homo sapiens; RNA-Seq - SRA

SRX2398186: GSM2417576: MIA CTRL 3; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 33.3M spots, 1.6G bases, 635.7Mb downloads

Submitted by: NCBI (GEO)

Study: TCF7L1 knockdown in pancreatic cancer

PRJNA356377 • SRP094619 • All experiments • All runs

show Abstracthide Abstract

RNAi mediated depletion of TCF7L1 increases activity of a Wnt-based reporter and imparts more aggressive tumor phenotypes in vitro in pancreatic cancer cell lines that express TCF7L1. We sought to determine what changes in transcription ocurred after RNAi mediated knockdown of TCF7L1 in these cells by RNA-sequencing Overall design: 12 samples, 4 different conditions with 3 replicates each

Sample: MIA CTRL 3

SAMN06112636 • SRS1839125 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 3000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: RNA was extracted from cell pellets using Zymo Quick-RNA MiniPrep Kit Catalog: 11-327 Constructed using the KAPA stranded mRNA kit

Experiment attributes:

GEO Accession: GSM2417576

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 33.3M spots, 1.6G bases, 635.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR5079691	33,252,385	1.6G	635.7Mb	2017-06-20

ID:: 3488073

SRA

Sequence Read Archive

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